Supplementary data to 

Small Libraries of Protein Fragments Accurately Model Native Protein Structures

  Rachel Kolodny, Patrice Koehl, Leonidas Guibas and Michael Levitt

Libraries data files:

Fragment length

Library Size

Complexity [States/ residue]a

Averageb Local cRMSD (A)

Averageb Global cRMSD (A)

Library Data

4

4

4

0.39

2.23

lib_4_z_4.txt

4

6

6

0.35

1.64

lib_6_z_4.txt

4

7

7

0.33

1.48

lib_7_z_4.txt

4

8

8

0.32

1.39

lib_8_z_4.txt

4

10

10

0.30

1.12

lib_10_z_4.txt

4

12

12

0.28

1.01

lib_12_z_4.txt

4

14

14

0.26

0.92

lib_14_z_4.txt

5

10

3.16

0.57

2.57

lib_10_z_5.txt

5

20

4.47

0.47

1.85

lib_20_z_5.txt

5

30

5.48

0.43

1.59

lib_30_z_5.txt

5

40

6.32

0.40

1.41

lib_40_z_5.txt

5

50

7.07

0.39

1.28

lib_50_z_5.txt

5

60

7.75

0.37

1.20

lib_60_z_5.txt

5

80

8.94

0.35

1.06

lib_80_z_5.txt

5

100

10

0.34

0.99

lib_100_z_5.txt

5

150

12.25

0.31

0.86

lib_150_z_5.txt

5

225

15

0.29

0.76

lib_225_z_5.txt

6

40

3.42

0.65

2.30

lib_40_z_6.txt

6

60

3.91

0.59

2.02

lib_60_z_6.txt

6

70

4.12

0.58

1.92

lib_70_z_6.txt

6

80

4.31

0.56

1.87

lib_80_z_6.txt

6

100

4.64

0.54

1.72

lib_100_z_6.txt

6

200

5.85

0.48

1.41

lib_200_z_6.txt

6

300

6.69

0.45

1.26

lib_300_z_6.txt

7

50

2.66

0.85

2.89

lib_50_z_7.txt

7

100

3.16

0.76

2.41

lib_100_z_7.txt

7

150

3.50

0.72

2.16

lib_150_z_7.txt

7

200

3.76

0.68

2.04

lib_200_z_7.txt

7

250

3.98

0.66

1.91

lib_250_z_7.txt

a The complexity, or the average number of states per residue, of a fragments library is |L|1/(f-3) where |L| is the library size and f is the length of the fragments in the library.

b The average is taken over the approximations of the test set proteins.